MR::Registration::NonLinear Class Reference

#include "registration/nonlinear.h"

Protected Member Functions
std::shared_ptr< Image< default_type > >	reslice (Image< default_type > &image, Header &header)
bool	has_negative_jacobians (Image< default_type > &field)

Protected Attributes
bool	is_initialised
vector< uint32_t >	max_iter
vector< default_type >	scale_factor
default_type	update_smoothing
default_type	disp_smoothing
default_type	gradient_step
Eigen::MatrixXd	aPSF_directions
bool	do_reorientation
vector< uint32_t >	fod_lmax
bool	use_cc
std::basic_string< char >	diagnostics_image_prefix
vector< size_t >	cc_extent
transform_type	im1_to_mid_linear
transform_type	im2_to_mid_linear
Header	midway_image_header
vector< MultiContrastSetting >	contrasts
vector< MultiContrastSetting >	stage_contrasts
std::shared_ptr< Image< default_type > >	im1_to_mid_new
std::shared_ptr< Image< default_type > >	im2_to_mid_new
std::shared_ptr< Image< default_type > >	im1_to_mid
std::shared_ptr< Image< default_type > >	im2_to_mid
std::shared_ptr< Image< default_type > >	mid_to_im1
std::shared_ptr< Image< default_type > >	mid_to_im2
std::shared_ptr< Image< default_type > >	im1_update
std::shared_ptr< Image< default_type > >	im2_update
std::shared_ptr< Image< default_type > >	im1_update_new
std::shared_ptr< Image< default_type > >	im2_update_new

Detailed Description

Definition at line 47 of file nonlinear.h.

Member Function Documentation

has_negative_jacobians()

bool MR::Registration::NonLinear::has_negative_jacobians ( Image< default_type > &  field )

inlineprotected

Definition at line 538 of file nonlinear.h.

reslice()

std::shared_ptr< Image< default_type > > MR::Registration::NonLinear::reslice ( Image< default_type > &  image, Header &  header  )

inlineprotected

Definition at line 532 of file nonlinear.h.

Member Data Documentation

aPSF_directions

Eigen::MatrixXd MR::Registration::NonLinear::aPSF_directions

protected

Definition at line 555 of file nonlinear.h.

cc_extent

vector<size_t> MR::Registration::NonLinear::cc_extent

protected

Definition at line 561 of file nonlinear.h.

contrasts

vector<MultiContrastSetting> MR::Registration::NonLinear::contrasts

protected

Definition at line 567 of file nonlinear.h.

diagnostics_image_prefix

std::basic_string<char> MR::Registration::NonLinear::diagnostics_image_prefix

protected

Definition at line 559 of file nonlinear.h.

disp_smoothing

default_type MR::Registration::NonLinear::disp_smoothing

protected

Definition at line 553 of file nonlinear.h.

do_reorientation

bool MR::Registration::NonLinear::do_reorientation

protected

Definition at line 556 of file nonlinear.h.

fod_lmax

vector<uint32_t> MR::Registration::NonLinear::fod_lmax

protected

Definition at line 557 of file nonlinear.h.

gradient_step

default_type MR::Registration::NonLinear::gradient_step

protected

Definition at line 554 of file nonlinear.h.

im1_to_mid

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im1_to_mid

protected

Definition at line 572 of file nonlinear.h.

im1_to_mid_linear

transform_type MR::Registration::NonLinear::im1_to_mid_linear

protected

Definition at line 563 of file nonlinear.h.

im1_to_mid_new

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im1_to_mid_new

protected

Definition at line 570 of file nonlinear.h.

im1_update

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im1_update

protected

Definition at line 577 of file nonlinear.h.

im1_update_new

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im1_update_new

protected

Definition at line 579 of file nonlinear.h.

im2_to_mid

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im2_to_mid

protected

Definition at line 573 of file nonlinear.h.

im2_to_mid_linear

transform_type MR::Registration::NonLinear::im2_to_mid_linear

protected

Definition at line 564 of file nonlinear.h.

im2_to_mid_new

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im2_to_mid_new

protected

Definition at line 571 of file nonlinear.h.

im2_update

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im2_update

protected

Definition at line 578 of file nonlinear.h.

im2_update_new

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::im2_update_new

protected

Definition at line 580 of file nonlinear.h.

is_initialised

bool MR::Registration::NonLinear::is_initialised

protected

Definition at line 549 of file nonlinear.h.

max_iter

vector<uint32_t> MR::Registration::NonLinear::max_iter

protected

Definition at line 550 of file nonlinear.h.

mid_to_im1

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::mid_to_im1

protected

Definition at line 574 of file nonlinear.h.

mid_to_im2

std::shared_ptr<Image<default_type> > MR::Registration::NonLinear::mid_to_im2

protected

Definition at line 575 of file nonlinear.h.

midway_image_header

Header MR::Registration::NonLinear::midway_image_header

protected

Definition at line 565 of file nonlinear.h.

scale_factor

vector<default_type> MR::Registration::NonLinear::scale_factor

protected

Definition at line 551 of file nonlinear.h.

stage_contrasts

vector<MultiContrastSetting> MR::Registration::NonLinear::stage_contrasts

protected

Definition at line 567 of file nonlinear.h.

update_smoothing

default_type MR::Registration::NonLinear::update_smoothing

protected

Definition at line 552 of file nonlinear.h.

use_cc

bool MR::Registration::NonLinear::use_cc

protected

Definition at line 558 of file nonlinear.h.

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The documentation for this class was generated from the following file:

• src/registration/nonlinear.h