tractography.h File Reference

#include "app.h"
#include "mrtrix.h"
#include "dwi/tractography/properties.h"

Go to the source code of this file.

Namespaces
namespace	MR
namespace	MR::App
namespace	MR::DWI
namespace	MR::DWI::Tractography
namespace	MR::DWI::Tractography::Tracking
namespace	MR::DWI::Tractography::Tracking::Defaults

Functions
void	MR::DWI::Tractography::Tracking::load_streamline_properties_and_rois (Properties &)

Variables
constexpr size_t	MR::DWI::Tractography::Tracking::Defaults::num_selected_tracks = 5000
constexpr size_t	MR::DWI::Tractography::Tracking::Defaults::seed_to_select_ratio = 1000
constexpr size_t	MR::DWI::Tractography::Tracking::Defaults::max_attempts_per_seed = 1000
constexpr float	MR::DWI::Tractography::Tracking::Defaults::cutoff_fod = 0.10f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::cutoff_fixel = 0.10f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::cutoff_fa = 0.10f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::cutoff_act_multiplier = 0.5f
constexpr size_t	MR::DWI::Tractography::Tracking::Defaults::max_trials_per_step = 1000
constexpr float	MR::DWI::Tractography::Tracking::Defaults::stepsize_voxels_firstorder = 0.1f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::stepsize_voxels_rk4 = 0.25f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::stepsize_voxels_ifod2 = 0.5f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::angle_deterministic = 60.0f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::angle_ifod1 = 15.0f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::angle_ifod2 = 45.0f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::minlength_voxels_noact = 5.0f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::minlength_voxels_withact = 2.0f
constexpr float	MR::DWI::Tractography::Tracking::Defaults::maxlength_voxels = 100.0f
constexpr size_t	MR::DWI::Tractography::Tracking::Defaults::ifod2_nsamples = 4
const App::OptionGroup	MR::DWI::Tractography::Tracking::TrackOption