MR::Stats::PermTest Namespace Reference

Classes
class	Permutation
class	PermutationStack
class	PreProcessor
class	Processor

Typedefs
using	value_type = Math::Stats::value_type
using	vector_type = Math::Stats::vector_type
using	matrix_type = Math::Stats::matrix_type
using	count_matrix_type = Eigen::Array< uint32_t, Eigen::Dynamic, Eigen::Dynamic >

Functions
void	precompute_empirical_stat (const std::shared_ptr< Math::Stats::GLM::TestBase > stats_calculator, const std::shared_ptr< EnhancerBase > enhancer, const default_type skew, matrix_type &empirical_statistic)
void	precompute_default_permutation (const std::shared_ptr< Math::Stats::GLM::TestBase > stats_calculator, const std::shared_ptr< EnhancerBase > enhancer, const matrix_type &empirical_enhanced_statistic, matrix_type &output_statistics, matrix_type &output_zstats, matrix_type &output_enhanced)
void	run_permutations (const std::shared_ptr< Math::Stats::GLM::TestBase > stats_calculator, const std::shared_ptr< EnhancerBase > enhancer, const matrix_type &empirical_enhanced_statistic, const matrix_type &default_enhanced_statistics, const bool fwe_strong, matrix_type &perm_dist, count_matrix_type &perm_dist_contributions, matrix_type &uncorrected_pvalues)

Typedef Documentation

count_matrix_type

using MR::Stats::PermTest::count_matrix_type = typedef Eigen::Array<uint32_t, Eigen::Dynamic, Eigen::Dynamic>

Definition at line 52 of file permtest.h.

matrix_type

using MR::Stats::PermTest::matrix_type = typedef Math::Stats::matrix_type

Definition at line 51 of file permtest.h.

value_type

using MR::Stats::PermTest::value_type = typedef Math::Stats::value_type

Definition at line 49 of file permtest.h.

vector_type

using MR::Stats::PermTest::vector_type = typedef Math::Stats::vector_type

Definition at line 50 of file permtest.h.

Function Documentation

precompute_default_permutation()

void MR::Stats::PermTest::precompute_default_permutation	(	const std::shared_ptr< Math::Stats::GLM::TestBase >	stats_calculator,
		const std::shared_ptr< EnhancerBase >	enhancer,
		const matrix_type &	empirical_enhanced_statistic,
		matrix_type &	output_statistics,
		matrix_type &	output_zstats,
		matrix_type &	output_enhanced
	)

precompute_empirical_stat()

void MR::Stats::PermTest::precompute_empirical_stat	(	const std::shared_ptr< Math::Stats::GLM::TestBase >	stats_calculator,
		const std::shared_ptr< EnhancerBase >	enhancer,
		const default_type	skew,
		matrix_type &	empirical_statistic
	)

run_permutations()

void MR::Stats::PermTest::run_permutations	(	const std::shared_ptr< Math::Stats::GLM::TestBase >	stats_calculator,
		const std::shared_ptr< EnhancerBase >	enhancer,
		const matrix_type &	empirical_enhanced_statistic,
		const matrix_type &	default_enhanced_statistics,
		const bool	fwe_strong,
		matrix_type &	perm_dist,
		count_matrix_type &	perm_dist_contributions,
		matrix_type &	uncorrected_pvalues
	)