MR::Registration::Transform Namespace Reference

Namespaces
namespace	Init

Classes
class	Affine
class	AffineRobustEstimator
class	AffineUpdate
class	Base
class	DoubleExpSmoothSlopeCheck
class	LinearKernel
class	LinearKernelMultiContrast
class	NonLinearKernel
class	NonLinearKernelMultiContrast
class	Rigid
class	RigidLinearNonSymmetricUpdate
class	RigidRobustEstimator

Enumerations
enum	TransformProjectionType { rigid_nonsym , affine , affine_nonsym , none }

Functions
template<class ValueType >
void	param_mat2vec (const Eigen::Matrix< ValueType, 3, 4, Eigen::RowMajor > &transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &param_vector)
template<class ValueType >
void	param_mat2vec (const Eigen::Matrix< ValueType, 4, 4, Eigen::RowMajor > &transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &param_vector)
template<class ValueType >
void	param_mat2vec (const Eigen::Matrix< ValueType, 3, 4, Eigen::ColMajor > &transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &param_vector)
template<class ValueType >
void	param_mat2vec (const Eigen::Matrix< ValueType, 4, 4, Eigen::ColMajor > &transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &param_vector)
template<class Derived , class ValueType >
void	param_vec2mat (const Eigen::MatrixBase< Derived > &param_vector, Eigen::Matrix< ValueType, 3, 4 > &transformation_matrix)
template<class Derived , class ValueType >
void	param_vec2mat (const Eigen::MatrixBase< Derived > &param_vector, Eigen::Matrix< ValueType, 4, 4 > &transformation_matrix)
FORCE_INLINE Eigen::MatrixXd	aPSF_weights_to_FOD_transform (const int num_SH, const Eigen::MatrixXd &directions)
FORCE_INLINE vector< vector< ssize_t > >	multiContrastSetting2start_nvols (const vector< MultiContrastSetting > &mcsettings, size_t &max_n_SH)
template<class FODImageType >
void	reorient (FODImageType &input_fod_image, FODImageType &output_fod_image, const transform_type &transform, const Eigen::MatrixXd &directions, bool modulate=false, vector< MultiContrastSetting > multi_contrast_settings=vector< MultiContrastSetting >())
template<class FODImageType >
void	reorient (const std::string progress_message, FODImageType &input_fod_image, FODImageType &output_fod_image, const transform_type &transform, const Eigen::MatrixXd &directions, bool modulate=false, vector< MultiContrastSetting > multi_contrast_settings=vector< MultiContrastSetting >())
template<class FODImageType >
void	reorient_warp (const std::string progress_message, FODImageType &fod_image, Image< default_type > &warp, const Eigen::MatrixXd &directions, const bool modulate=false, vector< MultiContrastSetting > multi_contrast_settings=vector< MultiContrastSetting >())
template<class FODImageType >
void	reorient_warp (FODImageType &fod_image, Image< default_type > &warp, const Eigen::MatrixXd &directions, const bool modulate=false, vector< MultiContrastSetting > multi_contrast_settings=vector< MultiContrastSetting >())

Enumeration Type Documentation

TransformProjectionType

enum MR::Registration::Transform::TransformProjectionType

Enumerator
rigid_nonsym
affine
affine_nonsym
none

Definition at line 33 of file affine.h.

Function Documentation

aPSF_weights_to_FOD_transform()

FORCE_INLINE Eigen::MatrixXd MR::Registration::Transform::aPSF_weights_to_FOD_transform	(	const int	num_SH,
		const Eigen::MatrixXd &	directions
	)

Definition at line 34 of file reorient.h.

multiContrastSetting2start_nvols()

FORCE_INLINE vector< vector< ssize_t > > MR::Registration::Transform::multiContrastSetting2start_nvols	(	const vector< MultiContrastSetting > &	mcsettings,
		size_t &	max_n_SH
	)

Definition at line 43 of file reorient.h.

param_mat2vec() [1/4]

template<class ValueType >

void MR::Registration::Transform::param_mat2vec ( const Eigen::Matrix< ValueType, 3, 4, Eigen::ColMajor > &  transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &  param_vector  )

inline

Definition at line 47 of file base.h.

param_mat2vec() [2/4]

template<class ValueType >

void MR::Registration::Transform::param_mat2vec ( const Eigen::Matrix< ValueType, 3, 4, Eigen::RowMajor > &  transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &  param_vector  )

inline

Definition at line 35 of file base.h.

param_mat2vec() [3/4]

template<class ValueType >

void MR::Registration::Transform::param_mat2vec ( const Eigen::Matrix< ValueType, 4, 4, Eigen::ColMajor > &  transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &  param_vector  )

inline

Definition at line 55 of file base.h.

param_mat2vec() [4/4]

template<class ValueType >

void MR::Registration::Transform::param_mat2vec ( const Eigen::Matrix< ValueType, 4, 4, Eigen::RowMajor > &  transformation_matrix, Eigen::Matrix< ValueType, Eigen::Dynamic, 1 > &  param_vector  )

inline

Definition at line 41 of file base.h.

param_vec2mat() [1/2]

template<class Derived , class ValueType >

void MR::Registration::Transform::param_vec2mat ( const Eigen::MatrixBase< Derived > &  param_vector, Eigen::Matrix< ValueType, 3, 4 > &  transformation_matrix  )

inline

Definition at line 63 of file base.h.

param_vec2mat() [2/2]

template<class Derived , class ValueType >

void MR::Registration::Transform::param_vec2mat ( const Eigen::MatrixBase< Derived > &  param_vector, Eigen::Matrix< ValueType, 4, 4 > &  transformation_matrix  )

inline

Definition at line 69 of file base.h.

reorient() [1/2]

template<class FODImageType >

void MR::Registration::Transform::reorient	(	const std::string	progress_message,
		FODImageType &	input_fod_image,
		FODImageType &	output_fod_image,
		const transform_type &	transform,
		const Eigen::MatrixXd &	directions,
		bool	modulate = false,
		vector< MultiContrastSetting >	multi_contrast_settings = vector<MultiContrastSetting>()
	)

Definition at line 184 of file reorient.h.

reorient() [2/2]

template<class FODImageType >

void MR::Registration::Transform::reorient	(	FODImageType &	input_fod_image,
		FODImageType &	output_fod_image,
		const transform_type &	transform,
		const Eigen::MatrixXd &	directions,
		bool	modulate = false,
		vector< MultiContrastSetting >	multi_contrast_settings = vector<MultiContrastSetting>()
	)

Definition at line 153 of file reorient.h.

reorient_warp() [1/2]

template<class FODImageType >

void MR::Registration::Transform::reorient_warp	(	const std::string	progress_message,
		FODImageType &	fod_image,
		Image< default_type > &	warp,
		const Eigen::MatrixXd &	directions,
		const bool	modulate = false,
		vector< MultiContrastSetting >	multi_contrast_settings = vector<MultiContrastSetting>()
	)

Definition at line 340 of file reorient.h.

reorient_warp() [2/2]

template<class FODImageType >

void MR::Registration::Transform::reorient_warp	(	FODImageType &	fod_image,
		Image< default_type > &	warp,
		const Eigen::MatrixXd &	directions,
		const bool	modulate = false,
		vector< MultiContrastSetting >	multi_contrast_settings = vector<MultiContrastSetting>()
	)

Definition at line 365 of file reorient.h.