MR::Registration::Transform::Init Namespace Reference

Classes
class	FODInitialiser
struct	LinearInitialisationParams
class	MomentsInitialiser

Enumerations
enum	InitType {   set_centre_mass , set_centre_geometric , mass , geometric ,   moments , rot_search , none }

Functions
void	set_centre_via_mass (Image< default_type > &im1, Image< default_type > &im2, Image< default_type > &mask1, Image< default_type > &mask2, Registration::Transform::Base &transform, Registration::Transform::Init::LinearInitialisationParams &init, const vector< MultiContrastSetting > &contrast_settings)
void	set_centre_via_image_centres (const Image< default_type > &im1, const Image< default_type > &im2, const Image< default_type > &mask1, const Image< default_type > &mask2, Registration::Transform::Base &transform, Registration::Transform::Init::LinearInitialisationParams &init)
void	initialise_using_image_centres (const Image< default_type > &im1, const Image< default_type > &im2, const Image< default_type > &mask1, const Image< default_type > &mask2, Registration::Transform::Base &transform, Registration::Transform::Init::LinearInitialisationParams &init)
void	initialise_using_image_moments (Image< default_type > &im1, Image< default_type > &im2, Image< default_type > &mask1, Image< default_type > &mask2, Registration::Transform::Base &transform, Registration::Transform::Init::LinearInitialisationParams &init, const vector< MultiContrastSetting > &contrast_settings)
void	initialise_using_FOD (Image< default_type > &im1, Image< default_type > &im2, Image< default_type > &mask1, Image< default_type > &mask2, Registration::Transform::Base &transform, Registration::Transform::Init::LinearInitialisationParams &init)
void	initialise_using_rotation_search (Image< default_type > &im1, Image< default_type > &im2, Image< default_type > &mask1, Image< default_type > &mask2, Registration::Transform::Base &transform, Registration::Transform::Init::LinearInitialisationParams &init, const vector< MultiContrastSetting > &contrast_settings)
void	initialise_using_image_mass (Image< default_type > &im1, Image< default_type > &im2, Image< default_type > &mask1, Image< default_type > &mask2, Registration::Transform::Base &transform, Registration::Transform::Init::LinearInitialisationParams &init, const vector< MultiContrastSetting > &contrast_settings)
template<class ImageType , class ValueType >
void	get_geometric_centre (const ImageType &image, Eigen::Matrix< ValueType, 3, 1 > &centre)
void	get_centre_of_mass (Image< default_type > &im, Image< default_type > &mask, Eigen::Vector3d &centre_of_mass, const vector< MultiContrastSetting > &contrast_settings)
bool	get_sorted_eigen_vecs_vals (const Eigen::Matrix< default_type, 3, 3 > &mat, Eigen::Matrix< default_type, Eigen::Dynamic, Eigen::Dynamic > &eigenvectors, Eigen::Matrix< default_type, Eigen::Dynamic, 1 > &eigenvals)

Enumeration Type Documentation

InitType

enum MR::Registration::Transform::Init::InitType

Enumerator
set_centre_mass
set_centre_geometric
mass
geometric
moments
rot_search
none

Definition at line 33 of file initialiser.h.

Function Documentation

get_centre_of_mass()

void MR::Registration::Transform::Init::get_centre_of_mass	(	Image< default_type > &	im,
		Image< default_type > &	mask,
		Eigen::Vector3d &	centre_of_mass,
		const vector< MultiContrastSetting > &	contrast_settings
	)

get_geometric_centre()

template<class ImageType , class ValueType >

void MR::Registration::Transform::Init::get_geometric_centre	(	const ImageType &	image,
		Eigen::Matrix< ValueType, 3, 1 > &	centre
	)

Definition at line 38 of file initialiser_helpers.h.

get_sorted_eigen_vecs_vals()

bool MR::Registration::Transform::Init::get_sorted_eigen_vecs_vals	(	const Eigen::Matrix< default_type, 3, 3 > &	mat,
		Eigen::Matrix< default_type, Eigen::Dynamic, Eigen::Dynamic > &	eigenvectors,
		Eigen::Matrix< default_type, Eigen::Dynamic, 1 > &	eigenvals
	)

initialise_using_FOD()

void MR::Registration::Transform::Init::initialise_using_FOD	(	Image< default_type > &	im1,
		Image< default_type > &	im2,
		Image< default_type > &	mask1,
		Image< default_type > &	mask2,
		Registration::Transform::Base &	transform,
		Registration::Transform::Init::LinearInitialisationParams &	init
	)

initialise_using_image_centres()

void MR::Registration::Transform::Init::initialise_using_image_centres	(	const Image< default_type > &	im1,
		const Image< default_type > &	im2,
		const Image< default_type > &	mask1,
		const Image< default_type > &	mask2,
		Registration::Transform::Base &	transform,
		Registration::Transform::Init::LinearInitialisationParams &	init
	)

initialise_using_image_mass()

void MR::Registration::Transform::Init::initialise_using_image_mass	(	Image< default_type > &	im1,
		Image< default_type > &	im2,
		Image< default_type > &	mask1,
		Image< default_type > &	mask2,
		Registration::Transform::Base &	transform,
		Registration::Transform::Init::LinearInitialisationParams &	init,
		const vector< MultiContrastSetting > &	contrast_settings
	)

initialise_using_image_moments()

void MR::Registration::Transform::Init::initialise_using_image_moments	(	Image< default_type > &	im1,
		Image< default_type > &	im2,
		Image< default_type > &	mask1,
		Image< default_type > &	mask2,
		Registration::Transform::Base &	transform,
		Registration::Transform::Init::LinearInitialisationParams &	init,
		const vector< MultiContrastSetting > &	contrast_settings
	)

initialise_using_rotation_search()

void MR::Registration::Transform::Init::initialise_using_rotation_search	(	Image< default_type > &	im1,
		Image< default_type > &	im2,
		Image< default_type > &	mask1,
		Image< default_type > &	mask2,
		Registration::Transform::Base &	transform,
		Registration::Transform::Init::LinearInitialisationParams &	init,
		const vector< MultiContrastSetting > &	contrast_settings
	)

set_centre_via_image_centres()

void MR::Registration::Transform::Init::set_centre_via_image_centres	(	const Image< default_type > &	im1,
		const Image< default_type > &	im2,
		const Image< default_type > &	mask1,
		const Image< default_type > &	mask2,
		Registration::Transform::Base &	transform,
		Registration::Transform::Init::LinearInitialisationParams &	init
	)

set_centre_via_mass()

void MR::Registration::Transform::Init::set_centre_via_mass	(	Image< default_type > &	im1,
		Image< default_type > &	im2,
		Image< default_type > &	mask1,
		Image< default_type > &	mask2,
		Registration::Transform::Base &	transform,
		Registration::Transform::Init::LinearInitialisationParams &	init,
		const vector< MultiContrastSetting > &	contrast_settings
	)