| ▼NMR | |
| ►NAdapter | |
| CBase | |
| CExtract | |
| CExtract1D | |
| CGaussian1D | |
| CGradient1D | |
| CGradient3D | |
| CJacobian | |
| CMedian | |
| CNeighbourhoodCoord | |
| CNormalise3D | |
| CPermuteAxes | |
| CRegrid | |
| CReplicate | |
| CReslice | Image providing interpolated values from another Image |
| CSubset | |
| CWarp | Image providing interpolated values from another Image |
| ►NAlgo | |
| ►NHistogram | |
| CCalibrator | |
| CData | |
| CMatcher | |
| ►NApp | |
| CArgument | A class to specify a command-line argument |
| CArgumentList | Class to hold the list of Argument's |
| CDescription | Vector of strings to hold more comprehensive command description |
| CExample | Object for storing a single example command usage |
| CExampleList | Class to hold the list of Example's |
| COption | A class to specify a command-line option |
| COptionGroup | Class to hold a named list of Option's |
| COptionList | Class to hold the list of option groups |
| CParsedArgument | |
| CParsedOption | Object storing information about option parsed from command-line |
| ►NColourMap | |
| CEntry | |
| ►NConnectome | |
| ►NEnhance | |
| CNBS | |
| CPassThrough | |
| CLUT | |
| CLUT_node | |
| CMat2Vec | |
| ►NDWI | |
| ►NDirections | |
| CFastLookupSet | |
| CMask | |
| CSet | |
| ►NFMLS | |
| CFOD_lobe | |
| CFOD_lobes | |
| CFODQueueWriter | |
| CIntegrationWeights | |
| CSegmenter | |
| CSH_coefs | |
| ►NSDeconv | |
| CCSD | |
| CMSMT_CSD | |
| ►NTractography | |
| ►NACT | |
| CACT_Method_additions | |
| CACT_Shared_additions | |
| CGMWMI_finder | |
| CTissues | |
| ►NAlgorithms | |
| CFACT | |
| ►CiFOD1 | |
| CCalibrate | |
| CiFOD2 | |
| CNullDist1 | |
| CNullDist2 | |
| CSDStream | |
| CSeedtest | |
| CTensor_Det | |
| ►CTensor_Prob | |
| CInterp | |
| CWildBootstrap | |
| ►NConnectome | |
| CExemplar | |
| CMapped_track_base | |
| CMapped_track_nodelist | |
| CMapped_track_nodepair | |
| CMapper | |
| CMatrix | |
| CMetric | |
| CSelector | |
| CStreamline_nodelist | |
| CStreamline_nodepair | |
| CTck2nodes_all_voxels | |
| ►CTck2nodes_base | |
| Cvoxel_type | |
| CTck2nodes_end_voxels | |
| CTck2nodes_forwardsearch | |
| CTck2nodes_radial | |
| CTck2nodes_revsearch | |
| CWriterExemplars | |
| CWriterExtraction | |
| ►NEditing | |
| CLoader | |
| CReceiver | |
| CWorker | |
| ►NGT | |
| CEnergyComputer | |
| CEnergySumComputer | |
| CExternalEnergyComputer | |
| CInternalEnergyComputer | |
| CMHSampler | The MHSampler class |
| CParticle | |
| CParticleEnd | |
| CParticleGrid | The ParticleGrid class |
| CParticlePool | ParticlePool manages creation and deletion of particles, minimizing the no. calls to new/delete |
| CProperties | |
| CSpatialLock | SpatialLock manages a mutex lock on n positions in 3D space |
| CStats | |
| ►NMapping | |
| ►NGaussian | |
| CDixel | |
| CSetDixel | |
| CSetVoxel | |
| CSetVoxelDEC | |
| CSetVoxelTOD | |
| CTrackMapper | |
| CVoxel | |
| CVoxelAddon | |
| CVoxelDEC | |
| CVoxelTOD | |
| CBufferScratchDump | |
| CDixel | |
| CDixelMappingPlugin | |
| CFixel_TD_map | |
| CMapWriter | |
| CMapWriterBase | |
| CSetDixel | |
| CSetVoxel | |
| CSetVoxelDEC | |
| CSetVoxelDir | |
| CSetVoxelExtras | |
| CSetVoxelTOD | |
| CTODMappingPlugin | |
| CTrackLoader | |
| CTrackMapperBase | |
| CTrackMapperTWI | |
| CTWDFCDynamicImagePlugin | |
| CTWDFCStaticImagePlugin | |
| CTWIFODImagePlugin | |
| CTWIImagePluginBase | |
| CTWIScalarImagePlugin | |
| CVoxel | |
| CVoxelDEC | |
| CVoxelDir | |
| CVoxelTOD | |
| ►NResampling | |
| CArc | |
| CBase | |
| CBaseCRTP | |
| CDownsampler | |
| CEndpoints | |
| CFixedNumPoints | |
| CFixedStepSize | |
| CUpsampler | |
| ►NSeeding | |
| CBase | |
| CDynamic | |
| CDynamic_ACT_additions | |
| CFixel_TD_seed | |
| CGMWMI | |
| CGMWMI_5TT_Wrapper | |
| CGrid_per_voxel | |
| CList | |
| CRandom_per_voxel | |
| CRejection | |
| CSeedMask | |
| CSphere | |
| CWriteKernelDynamic | |
| ►NSIFT | |
| CCost_fn_gradient_sort | |
| CFixel | |
| CFixelBase | |
| CModel | |
| CModelBase | |
| CMT_gradient_vector_sorter | |
| CResampleFunctor | |
| ►CSIFTer | |
| CTrackGradientCalculator | |
| CTrack_fixel_contribution | |
| CTrackContribution | |
| CTrackIndexRangeWriter | |
| ►NSIFT2 | |
| CCoefficientOptimiserBase | |
| CCoefficientOptimiserGSS | |
| CCoefficientOptimiserIterative | |
| CCoefficientOptimiserQLS | |
| CFixel | |
| CFixelUpdater | |
| ►CLineSearchFunctor | |
| CFixel | |
| CRegularisationCalculator | |
| CStreamlineStats | |
| CTckFactor | |
| ►NTracking | |
| CEarlyExit | |
| CExec | |
| CGeneratedTrack | |
| CInterpolator | |
| CMethodBase | |
| CSharedBase | |
| CWriteKernel | |
| CDataIndex | |
| CIncludeROIVisitation | |
| CMask | |
| CProperties | |
| CReader | A class to read streamlines data |
| CReaderInterface | |
| CROI | |
| CROIOrderedSet | |
| CROISetBase | |
| CROIUnorderedSet | |
| CScalarReader | |
| CScalarWriter | Class to handle writing track scalars to file |
| CStreamline | |
| CTrackScalar | |
| CWriter | Class to handle writing tracks to file, with RAM buffer |
| CWriterInterface | |
| CWriterUnbuffered | Class to handle unbuffered writing of tracks to file |
| CBootstrap | |
| ►CFixel_map | |
| CConstIterator | |
| CIterator | |
| CMapVoxel | |
| CShell | |
| CShells | |
| ►NFile | |
| ►NDicom | |
| CCSAEntry | |
| CDate | |
| CElement | |
| CFrame | |
| CImage | |
| CPatient | |
| CQuickScan | |
| CSequence | |
| CSeries | |
| CStudy | |
| CTime | |
| CTree | |
| ►NKeyValue | |
| CReader | |
| CConfig | |
| CEntry | |
| CGZ | |
| CMMap | |
| ►CNameParser | Class to interpret numbered filenames |
| CItem | |
| COFStream | Open output files for writing, checking for pre-existing file if necessary |
| ►CParsedName | Class to hold a parsed image filename |
| CList | Class to hold a set of parsed image filenames |
| CTIFF | |
| ►NFilter | |
| CBase | |
| CConnectedComponents | |
| ►CConnector | |
| CAdjacency | |
| CCluster | |
| CCopyKernel4D | |
| CDilate | Filter to dilate a mask |
| CDWIBrainMask | Filter to compute a whole brain mask from a DWI image |
| CErode | Filter to erode a mask |
| ►CFFT | Filter to perform an FFT on an image |
| CFFTKernel | |
| CGradient | |
| CImageCorrelationCostFunction | |
| CMaskClean | Filter to clean up masks typically output by DWIBrainMask filter |
| CMedian | |
| CNormalise | |
| COptimalThreshold | Filter to compute the optimal threshold to mask a DataSet |
| CResize | |
| ►CSmooth | |
| CSmoothFunctor1D | |
| CZClean | |
| ►NFixel | |
| ►NFilter | |
| CBase | |
| CConnect | |
| CSmooth | |
| ►NLegacy | |
| CFixelMetric | |
| CImage | |
| CValue | |
| ►NMatrix | |
| CInitElement | |
| CInitFixel | |
| CNormElement | |
| CNormFixel | |
| CReader | |
| CIndexRemapper | |
| ►CLoopFixelsInVoxel | |
| CRun | |
| ►NFormats | Classes responsible for handling of specific image formats |
| CBase | Interface for classes that support the various image formats |
| CDICOM | |
| CMGH | |
| CMGZ | |
| CMRI | |
| CMRtrix | |
| CMRtrix_GZ | |
| CMRtrix_sparse | |
| CNIfTI1 | |
| CNIfTI1_GZ | |
| CNIfTI2 | |
| CNIfTI2_GZ | |
| CPAR | |
| CPipe | |
| CXDS | |
| ►NGUI | |
| ►NDialog | |
| CImageProperties | |
| COpenGL | |
| CTreeItem | |
| CTreeModel | |
| ►NDWI | |
| ►CRenderer | |
| CDixel | |
| CSH | |
| CShader | |
| CTensor | |
| CRenderFrame | |
| CWindow | |
| ►NGL | |
| ►NContext | |
| CChecker | |
| CGrab | |
| ►NShader | |
| CObject | |
| CProgram | |
| CArea | |
| CFont | |
| CFrameBuffer | |
| CIndexBuffer | |
| CLighting | |
| Cmat4 | |
| CTexture | |
| Cvec4 | |
| CVertexArrayObject | |
| CVertexBuffer | |
| ►NMRView | |
| ►NMode | |
| ►NLightBoxViewControls | |
| CLightBoxEditButton | |
| CAction | |
| CBase | |
| CLightBox | |
| CModeGuiVisitor | |
| COrtho | |
| CSlice | |
| ►CVolume | |
| CShader | |
| ►NSync | |
| CClient | |
| CInterprocessCommunicator | |
| CLocalSocketReader | |
| CProcessLock | |
| CSyncManager | |
| ►NTool | |
| CAction | |
| ►CBase | |
| CFormLayout | |
| CGridLayout | |
| CHBoxLayout | |
| CVBoxLayout | |
| ►CBaseFixel | |
| CIntPointHasher | |
| CCameraInteractor | |
| CCapture | |
| CClipPlane | |
| CConnectome | |
| CDirectory | |
| CDock | |
| CEdge | |
| CEdgeColourObserver | |
| CEdgeShader | |
| CFileDataVector | |
| CFixel | |
| CFixelType | |
| CFixelValue | |
| CImage4D | |
| CLegacy | |
| CListModelBase | |
| CMatrix_list_model | |
| CNode | |
| CNode_list | |
| CNode_list_model | |
| CNode_list_view | |
| CNodeColourObserver | |
| ►CNodeOverlay | |
| CShader | |
| CNodeSelectionSettings | |
| CNodeSelectionSettingsDialog | |
| CNodeSelectionSettingsFrame | |
| CNodeShader | |
| CODF | |
| CODF_Item | |
| CODF_Model | |
| CODF_Preview | |
| ►COverlay | |
| CInterpolateCheckBox | |
| CROI | |
| CROI_Item | |
| CROI_Model | |
| ►CROI_UndoEntry | |
| CShared | |
| CShaderBase | |
| CTrackScalarFileOptions | |
| CTractogram | |
| CTractography | |
| CTransform | |
| CView | |
| CAdjustButton | |
| CColourBars | |
| CColourMapButton | |
| CColourMapButtonObserver | |
| CComboBoxWithErrorMsg | |
| CDisplayable | |
| CDisplayableVisitor | |
| ►CImage | |
| CCachedTexture | |
| CImageBase | |
| CVolume | |
| CWindow | |
| ►NShapes | |
| CCube | |
| CCylinder | |
| CHalfSphere | |
| CSphere | |
| CApp | |
| CCrosshair | |
| CCursor | |
| CLightingDock | |
| CLightingSettings | |
| CModelViewProjection | |
| CProjection | |
| CSpinBox | |
| ►NHelper | |
| CConstRow | |
| CRow | |
| ►NImageIO | Classes responsible for actual image loading & writing |
| CBase | |
| CDefault | |
| CGZ | |
| CMosaic | |
| CPipe | |
| CRAM | |
| CScratch | |
| CSparseLegacy | |
| ►CVariableScaling | |
| CScaleFactor | |
| ►NInterp | |
| CBase | This class defines the interface for classes that perform image interpolation |
| CLinearInterp | |
| CLinearInterp< ImageType, LinearInterpProcessingType::Derivative > | |
| CLinearInterp< ImageType, LinearInterpProcessingType::Value > | |
| CLinearInterp< ImageType, LinearInterpProcessingType::ValueAndDerivative > | |
| CLinearInterpBase | |
| CMasked | Implicit masking for interpolator class |
| CNearest | This class provides access to the voxel intensities of an Image, using nearest-neighbour interpolation |
| CSinc | This class provides access to the voxel intensities of an image, using sinc interpolation |
| CSplineInterp | |
| CSplineInterp< ImageType, SplineType, Math::SplineProcessingType::Derivative > | |
| CSplineInterp< ImageType, SplineType, Math::SplineProcessingType::Value > | |
| CSplineInterp< ImageType, SplineType, Math::SplineProcessingType::ValueAndDerivative > | |
| CSplineInterpBase | This class provides access to the voxel intensities of an image using cubic spline interpolation |
| Cvalue_type_of | This class provides access to the voxel intensities of a data set, using tri-linear interpolation |
| Cvalue_type_of< std::complex< X > > | |
| ►NMath | |
| ►NICLS | Functionality for solving constrained least-squares problems |
| CProblem | |
| CSolver | |
| ►NSH | |
| CaPSF | Class to hold the coefficients for an apodised point-spread function |
| CPrecomputedAL | Precomputed Associated Legrendre Polynomials - used to speed up SH calculation |
| CPrecomputedFraction | Used to speed up SH calculation |
| CTransform | |
| ►NStats | |
| ►NGLM | |
| CHypothesis | |
| CTestBase | |
| CTestFixedHeteroscedastic | |
| CTestFixedHomoscedastic | |
| CTestVariableHeteroscedastic | |
| CTestVariableHomoscedastic | |
| CCohortDataImport | |
| CShuffle | |
| CShuffler | |
| CSubjectDataImportBase | |
| ►NZSH | |
| CTransform | |
| CCubicSpline | |
| CGradientDescent | Computes the minimum of a function using a gradient descent approach |
| CGradientDescentBB | Computes the minimum of a function using a Barzilai Borwein gradient descent approach. ENH: implement stabilised version https://arxiv.org/abs/1907.06409 |
| CHermite | |
| CHermiteSpline | |
| CLinearUpdateBB | |
| CQuadraticLineSearch | Computes the minimum of a 1D function using a quadratic line search |
| ►CRNG | Random number generator |
| CInteger | |
| CNormal | |
| CUniform | |
| CSinc | |
| CSn_scale_estimator | |
| CUniformBSpline | |
| ►CZstatistic | |
| CLookup_F2z | |
| CLookup_t2z | |
| CLookupBase | |
| ►NPath | |
| CDir | |
| ►NRegistration | |
| ►NMetric | |
| CCrossCorrelationNoGradient | |
| CDemons | |
| CDemons4D | |
| CDemonsCC | |
| CDifferenceRobust | |
| CDifferenceRobust4D | |
| CEvaluate | |
| CL1 | |
| CL2 | |
| CLCCPrecomputeFunctorMasked_Naive | |
| CLinearBase | |
| CLocalCrossCorrelation | |
| CLP | |
| CMeanSquared | |
| CMeanSquared4D | |
| CMeanSquared4DNonSymmetric | |
| CMeanSquaredNoGradient | |
| CMeanSquaredNoGradient4D | |
| CMeanSquaredNonSymmetric | |
| CMeanSquaredVectorNoGradient4D | |
| CParams | |
| CStochasticThreadKernel | |
| CThreadKernel | |
| ►NRotationSearch | |
| CExhaustiveRotationSearch | |
| ►NTransform | |
| ►NInit | |
| CFODInitialiser | |
| ►CLinearInitialisationParams | |
| ►CRotationInit | |
| ►Crot_search | |
| Cglobal_search | |
| CMomentsInitialiser | |
| CAffine | |
| CAffineRobustEstimator | |
| CAffineUpdate | |
| CBase | |
| CDoubleExpSmoothSlopeCheck | |
| CLinearKernel | |
| CLinearKernelMultiContrast | |
| CNonLinearKernel | |
| CNonLinearKernelMultiContrast | |
| CRigid | |
| CRigidLinearNonSymmetricUpdate | |
| CRigidRobustEstimator | |
| ►NWarp | |
| CComposeDispKernel | |
| CComposeHalfwayKernel | |
| CComposeLinearDeformKernel | |
| CComposeLinearDispKernel | |
| CLinear | |
| CMultiContrastSetting | |
| CNonLinear | |
| CStageSetting | |
| ►NStats | |
| ►NCluster | |
| CClusterSize | |
| ►NPermTest | |
| CPermutation | |
| CPermutationStack | |
| CPreProcessor | |
| CProcessor | |
| ►NTFCE | |
| CEnhancerBase | |
| CWrapper | |
| CCFE | |
| CEnhancerBase | |
| CStats | |
| ►NSurface | |
| ►NFilter | |
| CBase | |
| CSmooth | |
| CVertexTransform | |
| CMesh | |
| CMeshMulti | |
| CPolygon | |
| CScalar | |
| CVox | |
| ►NThread | |
| C__Backend | |
| ►CQueue | A first-in first-out thread-safe item queue |
| ►CReader | This class is used to register a reader with the queue |
| CItem | This class is used to read items from the queue |
| ►CWriter | This class is used to register a writer with the queue |
| CItem | This class is used to write items to the queue |
| ►CBitSet | Class for storing bitwise information |
| CConstValue | |
| CValue | |
| CCancelException | |
| Ccompare_ptr_contents | |
| Ccontainer_cast | |
| Ccontainer_value_type | Get the underlying scalar value type for both std:: containers and Eigen |
| Ccontainer_value_type< Cont, typename std::enable_if< is_eigen_type< Cont >::value, int >::type > | |
| Ccopy_ptr | |
| CDataType | |
| Cdeque | |
| Cdeque< X, 0 > | |
| CException | |
| CHeader | |
| ►CImage | Functions and classes related to image data input/output |
| CBuffer | |
| CIntervalTimer | |
| CInvalidFixelDirectoryException | |
| CInvalidImageException | |
| Cis_complex | Check whether type is complex: |
| Cis_complex< std::complex< ValueType > > | |
| Cis_data_type | Check whether type is compatible with MRtrix3's file IO backend: |
| Cis_eigen_type | Convenience functions for SFINAE on std:: / Eigen containers |
| CIterator | Dummy image to iterate over, useful for multi-threaded looping |
| CIterator_loop | |
| CLogLevelLatch | |
| CLoopAlongAxes | |
| CLoopAlongAxesProgress | |
| ►CLoopAlongAxisRange | |
| CRun | |
| ►CLoopAlongAxisRangeProgress | |
| CRun | |
| ►CLoopAlongDynamicAxes | |
| CRun | |
| ►CLoopAlongDynamicAxesProgress | |
| CRun | |
| ►CLoopAlongSingleAxis | |
| CRun | |
| ►CLoopAlongSingleAxisProgress | |
| CRun | |
| ►CLoopAlongStaticAxes | |
| CRun | |
| ►CLoopAlongStaticAxesProgress | |
| CRun | |
| Cmax_digits | |
| Cmax_digits< X, typename std::enable_if< std::is_fundamental< typename X::Scalar >::value, int >::type > | |
| Cmax_digits< X, typename std::enable_if< std::is_fundamental< typename X::value_type >::value &&!std::is_fundamental< typename X::Scalar >::value, int >::type > | |
| Cmax_digits< X, typename std::enable_if< std::is_fundamental< X >::value, int >::type > | |
| CMin_mem_array | |
| CNeighbourhoodIterator | Dummy image to iterate over a certain neighbourhood, useful for multi-threaded looping |
| ►CProgressBar | Implements a progress meter to provide feedback to the user |
| CSwitchToMultiThreaded | |
| CRandom_loop | |
| CRandom_sparse_loop | |
| CTimer | |
| CTransform | |
| Cvector | |
| Cvector< X, 0 > | |
| CVoxel2Vector | |
| C__has_custom_new_operator | |
| Cnifti_2_header | Data structure defining the fields in the nifti2 header. This binary header should be found at the beginning of a valid NIFTI-2 header file |
| CQColorButton | |
1.9.3